J3_8QBT_013
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8QBT|1|i|A|975, 8QBT|1|i|G|976, 8QBT|1|i|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QBT_013 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0584
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8QBT|1|i|U|955
8QBT|1|i|U|956
8QBT|1|i|U|957
8QBT|1|i|A|958
8QBT|1|i|A|959
8QBT|1|i|U|960
8QBT|1|i|U|961
8QBT|1|i|C|962
*
8QBT|1|i|G|973
8QBT|1|i|A|974
8QBT|1|i|A|975
8QBT|1|i|G|976
8QBT|1|i|A|977
8QBT|1|i|A|978
8QBT|1|i|C|979
8QBT|1|i|C|980
8QBT|1|i|U|981
8QBT|1|i|U|982
8QBT|1|i|A|983
8QBT|1|i|C|984
*
8QBT|1|i|G|1221
8QBT|1|i|G|1222
8QBT|1|i|C|1223
8QBT|1|i|U|1224
8QBT|1|i|A|1225
Current chains
- Chain i
- 16S rRNA
Nearby chains
- Chain 1
- Small ribosomal subunit protein uS19
- Chain 5
- Transfer RNA; tRNA
- Chain u
- Small ribosomal subunit protein uS13
- Chain v
- Small ribosomal subunit protein uS14
Coloring options: