J3_8QBT_014

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QBT_014 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1232

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8QBT|1|i|C|990
8QBT|1|i|U|991
8QBT|1|i|U|992
8QBT|1|i|G|993
*
8QBT|1|i|C|1045
8QBT|1|i|A|1046
8QBT|1|i|G|1047
*
8QBT|1|i|C|1210
8QBT|1|i|U|1211
8QBT|1|i|U|1212
8QBT|1|i|A|1213
8QBT|1|i|C|1214
8QBT|1|i|G|1215

Current chains

Chain i

16S rRNA

Nearby chains

Chain v

Small ribosomal subunit protein uS14