J3_8QBT_030

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8QBT|1|i|C|48, 8QBT|1|i|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QBT_030 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1496

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8QBT|1|i|G|46
8QBT|1|i|C|47
8QBT|1|i|C|48
8QBT|1|i|U|49
8QBT|1|i|A|50
8QBT|1|i|A|51
8QBT|1|i|C|52
*
8QBT|1|i|G|359
8QBT|1|i|G|360
8QBT|1|i|G|361
8QBT|1|i|G|362
8QBT|1|i|A|363
8QBT|1|i|A|364
8QBT|1|i|U|365
8QBT|1|i|A|366
8QBT|1|i|U|367
*
8QBT|1|i|A|393
8QBT|1|i|G|394
8QBT|1|i|C|395

Current chains

Chain i

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S12