J3_8QBT_031
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGG*CUUG*CG
- Length
- 9 nucleotides
- Bulged bases
- 8QBT|1|i|U|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QBT_031 not in the Motif Atlas
- Geometric match to J3_4LFB_011
- Geometric discrepancy: 0.0734
- The information below is about J3_4LFB_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.1
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8QBT|1|i|C|586
8QBT|1|i|G|587
8QBT|1|i|G|588
*
8QBT|1|i|C|651
8QBT|1|i|U|652
8QBT|1|i|U|653
8QBT|1|i|G|654
*
8QBT|1|i|C|754
8QBT|1|i|G|755
Current chains
- Chain i
- 16S rRNA
Nearby chains
- Chain p
- Small ribosomal subunit protein uS8
- Chain t
- 30S ribosomal protein S12
- Chain w
- Small ribosomal subunit protein uS15
- Chain y
- Small ribosomal subunit protein uS17
Coloring options: