J3_8QCQ_015
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8QCQ|1|a|A|985, 8QCQ|1|a|G|986, 8QCQ|1|a|A|988
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QCQ_015 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0634
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8QCQ|1|a|U|965
8QCQ|1|a|U|966
8QCQ|1|a|U|967
8QCQ|1|a|A|968
8QCQ|1|a|A|969
8QCQ|1|a|U|970
8QCQ|1|a|U|971
8QCQ|1|a|C|972
*
8QCQ|1|a|G|983
8QCQ|1|a|A|984
8QCQ|1|a|A|985
8QCQ|1|a|G|986
8QCQ|1|a|A|987
8QCQ|1|a|A|988
8QCQ|1|a|C|989
8QCQ|1|a|C|990
8QCQ|1|a|U|991
8QCQ|1|a|U|992
8QCQ|1|a|A|993
8QCQ|1|a|C|994
*
8QCQ|1|a|G|1230
8QCQ|1|a|G|1231
8QCQ|1|a|C|1232
8QCQ|1|a|U|1233
8QCQ|1|a|A|1234
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14
- Chain s
- 30S ribosomal protein S19
- Chain y
- Transfer RNA; tRNA
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