J3_8QCQ_033

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

8QCQ|1|a|U|1223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QCQ_033 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1096

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8QCQ|1|a|C|1000
8QCQ|1|a|U|1001
8QCQ|1|a|U|1002
8QCQ|1|a|G|1003
8QCQ|1|a|A|1004
8QCQ|1|a|C|1005
8QCQ|1|a|A|1006
8QCQ|1|a|U|1007
*
8QCQ|1|a|A|1054
8QCQ|1|a|C|1055
8QCQ|1|a|A|1056
8QCQ|1|a|G|1057
*
8QCQ|1|a|C|1219
8QCQ|1|a|U|1220
8QCQ|1|a|U|1221
8QCQ|1|a|A|1222
8QCQ|1|a|U|1223
8QCQ|1|a|G|1224

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S14