J3_8QCQ_036
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UGA*UGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 8QCQ|1|a|U|1192
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QCQ_036 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.0951
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8QCQ|1|a|U|1126
8QCQ|1|a|G|1127
8QCQ|1|a|A|1128
*
8QCQ|1|a|U|1164
8QCQ|1|a|G|1165
8QCQ|1|a|A|1166
8QCQ|1|a|C|1167
8QCQ|1|a|U|1168
8QCQ|1|a|G|1169
8QCQ|1|a|C|1170
*
8QCQ|1|a|G|1184
8QCQ|1|a|A|1185
8QCQ|1|a|G|1186
8QCQ|1|a|G|1187
8QCQ|1|a|A|1188
8QCQ|1|a|A|1189
8QCQ|1|a|G|1190
8QCQ|1|a|G|1191
8QCQ|1|a|U|1192
8QCQ|1|a|G|1193
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- Small ribosomal subunit protein uS7
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14
Coloring options: