J3_8QFD_001

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

8QFD|1|5|C|154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QFD|1|5|C|107
8QFD|1|5|A|108
8QFD|1|5|G|109
8QFD|1|5|C|110
8QFD|1|5|G|111
*
8QFD|1|5|C|150
8QFD|1|5|G|151
8QFD|1|5|U|152
8QFD|1|5|A|153
8QFD|1|5|C|154
8QFD|1|5|G|155
*
8QFD|1|5|C|270
8QFD|1|5|C|271
8QFD|1|5|G|272
8QFD|1|5|G|273

Current chains

Chain 5

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain L

60S ribosomal protein L13

Chain N

60S ribosomal protein L15

Chain h

60S ribosomal protein L35

Chain i

60S ribosomal protein L36