J3_8QFD_004
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAG*CGUAG*UCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QFD_004 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.1754
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8QFD|1|5|C|1538
8QFD|1|5|A|1539
8QFD|1|5|G|1540
*
8QFD|1|5|C|1572
8QFD|1|5|G|1573
8QFD|1|5|U|1574
8QFD|1|5|A|1575
8QFD|1|5|G|1576
*
8QFD|1|5|U|1601
8QFD|1|5|C|1602
8QFD|1|5|C|1603
8QFD|1|5|G|1604
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain R
- 60S ribosomal protein L19
- Chain g
- 60S ribosomal protein L34
- Chain p
- 60S ribosomal protein L37a
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