J3_8QFD_007

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QFD|1|5|A|2543
8QFD|1|5|G|2544
8QFD|1|5|A|2545
8QFD|1|5|U|2546
8QFD|1|5|G|2547
*
8QFD|1|5|C|2564
8QFD|1|5|A|2565
8QFD|1|5|G|2566
8QFD|1|5|U|2567
*
8QFD|1|5|A|2749
8QFD|1|5|G|2750
8QFD|1|5|G|2751
8QFD|1|5|G|2752
8QFD|1|5|U|2753
8QFD|1|5|G|2754
8QFD|1|5|U|2755
8QFD|1|5|A|2756
8QFD|1|5|A|2757
8QFD|1|5|A|2758
8QFD|1|5|U|2759

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Z

60S ribosomal protein L27