J3_8QFD_013
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 8QFD|1|5|U|349, 8QFD|1|5|A|357, 8QFD|1|8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QFD_013 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.06
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8QFD|1|5|C|346
8QFD|1|5|G|347
8QFD|1|5|A|348
8QFD|1|5|U|349
8QFD|1|5|A|350
8QFD|1|5|G|351
8QFD|1|5|U|352
8QFD|1|5|C|353
8QFD|1|5|A|354
8QFD|1|5|A|355
8QFD|1|5|C|356
8QFD|1|5|A|357
8QFD|1|5|A|358
8QFD|1|5|G|359
8QFD|1|5|U|360
8QFD|1|5|A|361
8QFD|1|5|C|362
*
8QFD|1|5|G|369
8QFD|1|5|G|370
8QFD|1|5|A|371
8QFD|1|5|A|372
8QFD|1|5|A|373
8QFD|1|5|G|374
*
8QFD|1|8|C|21
8QFD|1|8|U|22
8QFD|1|8|C|23
8QFD|1|8|G|24
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain Y
- 60S ribosomal protein L26
- Chain j
- Ribosomal protein L37
- Chain l
- 60S ribosomal protein L39
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