J3_8QFD_015
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 8QFD|1|5|G|404, 8QFD|1|5|G|408
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QFD_015 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.309
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8QFD|1|5|U|375
8QFD|1|5|U|376
8QFD|1|5|G|377
8QFD|1|5|A|378
8QFD|1|5|A|379
8QFD|1|5|A|380
8QFD|1|5|A|381
8QFD|1|5|G|382
8QFD|1|5|A|383
8QFD|1|5|A|384
8QFD|1|5|C|385
*
8QFD|1|5|G|396
8QFD|1|5|A|397
8QFD|1|5|G|398
8QFD|1|5|U|399
8QFD|1|5|U|400
8QFD|1|5|C|401
8QFD|1|5|A|402
8QFD|1|5|A|403
8QFD|1|5|G|404
8QFD|1|5|A|405
8QFD|1|5|G|406
8QFD|1|5|G|407
8QFD|1|5|G|408
8QFD|1|5|C|409
8QFD|1|5|G|410
*
8QFD|1|8|C|19
8QFD|1|8|A|20
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain P
- 60S ribosomal protein L17
- Chain Y
- 60S ribosomal protein L26
- Chain l
- 60S ribosomal protein L39
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