J3_8QFD_016
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UU*AGAAG*CGUGGA
- Length
- 13 nucleotides
- Bulged bases
- 8QFD|1|5|A|1797, 8QFD|1|5|U|1826
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QFD_016 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.5163
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8QFD|1|5|U|1718
8QFD|1|5|U|1719
*
8QFD|1|5|A|1794
8QFD|1|5|G|1795
8QFD|1|5|A|1796
8QFD|1|5|A|1797
8QFD|1|5|G|1798
*
8QFD|1|5|C|1824
8QFD|1|5|G|1825
8QFD|1|5|U|1826
8QFD|1|5|G|1827
8QFD|1|5|G|1828
8QFD|1|5|A|1829
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain F
- Large ribosomal subunit protein uL30
- Chain T
- 60S ribosomal protein L21
- Chain b
- 60S ribosomal protein L29
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