J3_8QOA_027

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QOA_027 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.043

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8QOA|1|a|G|30
8QOA|1|a|C|31
*
8QOA|1|a|G|474
8QOA|1|a|C|475
8QOA|1|a|G|476
8QOA|1|a|A|477
8QOA|1|a|A|478
8QOA|1|a|A|479
8QOA|1|a|A|480
8QOA|1|a|G|481
*
8QOA|1|a|C|509
8QOA|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain 6

Secretion monitor

Chain p

Large ribosomal subunit protein bL20

Chain t

Large ribosomal subunit protein uL24