J3_8QOI_001

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

8QOI|1|L5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|C|112
8QOI|1|L5|A|113
8QOI|1|L5|G|114
8QOI|1|L5|C|115
8QOI|1|L5|G|116
*
8QOI|1|L5|C|155
8QOI|1|L5|G|156
8QOI|1|L5|U|157
8QOI|1|L5|A|158
8QOI|1|L5|C|159
8QOI|1|L5|G|160
*
8QOI|1|L5|C|275
8QOI|1|L5|C|276
8QOI|1|L5|G|277
8QOI|1|L5|G|278

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36