J3_8QOI_006

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8QOI|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|A|2551
8QOI|1|L5|G|2552
8QOI|1|L5|A|2553
8QOI|1|L5|U|2554
8QOI|1|L5|G|2555
*
8QOI|1|L5|C|2572
8QOI|1|L5|A|2573
8QOI|1|L5|G|2574
8QOI|1|L5|U|2575
*
8QOI|1|L5|A|2757
8QOI|1|L5|G|2758
8QOI|1|L5|G|2759
8QOI|1|L5|G|2760
8QOI|1|L5|U|2761
8QOI|1|L5|G|2762
8QOI|1|L5|U|2763
8QOI|1|L5|A|2764
8QOI|1|L5|A|2765
8QOI|1|L5|A|2766
8QOI|1|L5|U|2767

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LZ

60S ribosomal protein L27