J3_8QOI_025

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA

Length

28 nucleotides

Bulged bases

8QOI|1|L5|G|409, 8QOI|1|L5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QOI_025 not in the Motif Atlas

Homologous match to J3_8C3A_049

Geometric discrepancy: 0.3072

The information below is about J3_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91149.1

Basepair signature

cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8QOI|1|L5|U|380
8QOI|1|L5|U|381
8QOI|1|L5|G|382
8QOI|1|L5|A|383
8QOI|1|L5|A|384
8QOI|1|L5|A|385
8QOI|1|L5|A|386
8QOI|1|L5|G|387
8QOI|1|L5|A|388
8QOI|1|L5|A|389
8QOI|1|L5|C|390
*
8QOI|1|L5|G|401
8QOI|1|L5|A|402
8QOI|1|L5|G|403
8QOI|1|L5|U|404
8QOI|1|L5|U|405
8QOI|1|L5|C|406
8QOI|1|L5|A|407
8QOI|1|L5|A|408
8QOI|1|L5|G|409
8QOI|1|L5|A|410
8QOI|1|L5|G|411
8QOI|1|L5|G|412
8QOI|1|L5|G|413
8QOI|1|L5|C|414
8QOI|1|L5|G|415
*
8QOI|1|L8|C|19
8QOI|1|L8|A|20

Current chains

Chain L5

28S rRNA (3773-MER)

Chain L8

5.8S rRNA (156-MER)

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LP

60S ribosomal protein L17

Chain LY

60S ribosomal protein L26

Chain Ll

60S ribosomal protein L39