J3_8QOI_030
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 8QOI|1|L5|C|2470, 8QOI|1|L5|A|2472, 8QOI|1|L5|G|2475, 8QOI|1|L5|G|2503, 8QOI|1|L5|C|2504
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QOI|1|L5|A|2451
8QOI|1|L5|G|2452
8QOI|1|L5|A|2453
8QOI|1|L5|U|2454
8QOI|1|L5|G|2455
8QOI|1|L5|G|2456
*
8QOI|1|L5|C|2465
8QOI|1|L5|G|2466
8QOI|1|L5|U|2467
8QOI|1|L5|U|2468
8QOI|1|L5|C|2469
8QOI|1|L5|C|2470
8QOI|1|L5|G|2471
8QOI|1|L5|A|2472
8QOI|1|L5|A|2473
8QOI|1|L5|G|2474
8QOI|1|L5|G|2475
8QOI|1|L5|G|2476
*
8QOI|1|L5|C|2501
8QOI|1|L5|G|2502
8QOI|1|L5|G|2503
8QOI|1|L5|C|2504
8QOI|1|L5|C|2505
8QOI|1|L5|G|2506
8QOI|1|L5|A|2507
8QOI|1|L5|PSU|2508
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LN
- 60S ribosomal protein L15
- Chain LX
- 60S ribosomal protein L23a
- Chain Lj
- 60S ribosomal protein L37
Coloring options: