J3_8QOI_032

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QOI_032 not in the Motif Atlas

Homologous match to J3_8C3A_055

Geometric discrepancy: 0.1601

The information below is about J3_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10980.1

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8QOI|1|L5|A|2598
8QOI|1|L5|G|2599
8QOI|1|L5|A|2600
8QOI|1|L5|A|2601
8QOI|1|L5|G|2602
*
8QOI|1|L5|C|2737
8QOI|1|L5|C|2738
*
8QOI|1|L5|G|2742
8QOI|1|L5|A|2743
8QOI|1|L5|A|2744
8QOI|1|L5|A|2745
8QOI|1|L5|A|2746
8QOI|1|L5|U|2747

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a