J3_8QOI_033
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- (OMG)UC*GCCUUACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 8QOI|1|L5|C|4337, 8QOI|1|L5|U|4374
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QOI_033 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.064
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8QOI|1|L5|OMG|4228
8QOI|1|L5|U|4229
8QOI|1|L5|C|4230
*
8QOI|1|L5|G|4331
8QOI|1|L5|C|4332
8QOI|1|L5|C|4333
8QOI|1|L5|U|4334
8QOI|1|L5|U|4335
8QOI|1|L5|A|4336
8QOI|1|L5|C|4337
8QOI|1|L5|G|4338
8QOI|1|L5|A|4339
8QOI|1|L5|U|4340
8QOI|1|L5|C|4341
8QOI|1|L5|C|4342
*
8QOI|1|L5|OMG|4370
8QOI|1|L5|G|4371
8QOI|1|L5|U|4372
8QOI|1|L5|G|4373
8QOI|1|L5|U|4374
8QOI|1|L5|C|4375
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lo
- 60S ribosomal protein L36a
Coloring options: