J3_8QOI_045
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 8QOI|1|S2|G|1256, 8QOI|1|S2|A|1258, 8QOI|1|S2|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QOI_045 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.1272
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8QOI|1|S2|C|1237
8QOI|1|S2|PSU|1238
8QOI|1|S2|U|1239
8QOI|1|S2|A|1240
8QOI|1|S2|A|1241
8QOI|1|S2|U|1242
8QOI|1|S2|U|1243
8QOI|1|S2|PSU|1244
*
8QOI|1|S2|G|1255
8QOI|1|S2|G|1256
8QOI|1|S2|G|1257
8QOI|1|S2|A|1258
8QOI|1|S2|A|1259
8QOI|1|S2|A|1260
8QOI|1|S2|C|1261
8QOI|1|S2|C|1262
8QOI|1|S2|U|1263
8QOI|1|S2|C|1264
8QOI|1|S2|A|1265
8QOI|1|S2|C|1266
*
8QOI|1|S2|G|1516
8QOI|1|S2|G|1517
8QOI|1|S2|C|1518
8QOI|1|S2|U|1519
8QOI|1|S2|G|1520
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain SP
- 40S ribosomal protein S15
- Chain SS
- 40S ribosomal protein S18
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
Coloring options: