J3_8QPP_017

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

8QPP|1|X|A|2547, 8QPP|1|X|U|2548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QPP_017 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1144

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8QPP|1|X|C|2546
8QPP|1|X|A|2547
8QPP|1|X|U|2548
8QPP|1|X|C|2549
*
8QPP|1|X|G|2574
8QPP|1|X|U|2575
8QPP|1|X|U|2576
*
8QPP|1|X|A|2590
8QPP|1|X|U|2591
8QPP|1|X|U|2592
8QPP|1|X|A|2593
8QPP|1|X|A|2594
8QPP|1|X|A|2595
8QPP|1|X|G|2596

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L14