J3_8QPP_038

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

8QPP|1|X|C|1384, 8QPP|1|X|A|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QPP_038 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1362

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

8QPP|1|X|U|1383
8QPP|1|X|C|1384
8QPP|1|X|G|1385
8QPP|1|X|G|1386
8QPP|1|X|G|1387
8QPP|1|X|A|1388
8QPP|1|X|C|1389
*
8QPP|1|X|G|1420
8QPP|1|X|A|1421
8QPP|1|X|C|1422
8QPP|1|X|A|1423
8QPP|1|X|A|1424
*
8QPP|1|X|U|1441
8QPP|1|X|A|1442

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23