J3_8QRK_004
3D structure
- PDB id
- 8QRK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.69 Å
Loop
- Sequence
- AGGA*UAC*GGAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QRK_004 not in the Motif Atlas
- Homologous match to J3_5J7L_005
- Geometric discrepancy: 0.1158
- The information below is about J3_5J7L_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8QRK|1|A|A|1198
8QRK|1|A|G|1199
8QRK|1|A|G|1200
8QRK|1|A|A|1201
*
8QRK|1|A|U|1364
8QRK|1|A|A|1365
8QRK|1|A|C|1366
*
8QRK|1|A|G|1421
8QRK|1|A|G|1422
8QRK|1|A|A|1423
8QRK|1|A|U|1424
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain F
- 28S ribosomal protein S7, mitochondrial
- Chain G
- 28S ribosomal protein S9, mitochondrial
Coloring options: