J3_8QRL_005

3D structure

PDB id

8QRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

UGUAAUC*GAUCAACCUCAC*GCAA

Length

23 nucleotides

Bulged bases

8QRL|1|A|U|1229, 8QRL|1|A|C|1230, 8QRL|1|A|A|1232

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QRL|1|A|U|1210
8QRL|1|A|G|1211
8QRL|1|A|U|1212
8QRL|1|A|A|1213
8QRL|1|A|A|1214
8QRL|1|A|U|1215
8QRL|1|A|C|1216
*
8QRL|1|A|G|1227
8QRL|1|A|A|1228
8QRL|1|A|U|1229
8QRL|1|A|C|1230
8QRL|1|A|A|1231
8QRL|1|A|A|1232
8QRL|1|A|C|1233
8QRL|1|A|C|1234
8QRL|1|A|U|1235
8QRL|1|A|C|1236
8QRL|1|A|A|1237
8QRL|1|A|C|1238
*
8QRL|1|A|G|1351
8QRL|1|A|C|1352
8QRL|1|A|A|1353
8QRL|1|A|A|1354

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain H

28S ribosomal protein S10, mitochondrial

Chain K

28S ribosomal protein S14, mitochondrial