J3_8QRL_010
3D structure
- PDB id
- 8QRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- CAUUU*AAACUAC*GGUG
- Length
- 16 nucleotides
- Bulged bases
- 8QRL|1|A|U|1369, 8QRL|1|A|C|1385, 8QRL|1|A|U|1386
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QRL|1|A|C|1366
8QRL|1|A|A|1367
8QRL|1|A|U|1368
8QRL|1|A|U|1369
8QRL|1|A|U|1370
*
8QRL|1|A|A|1382
8QRL|1|A|A|1383
8QRL|1|A|A|1384
8QRL|1|A|C|1385
8QRL|1|A|U|1386
8QRL|1|A|A|1387
8QRL|1|A|C|1388
*
8QRL|1|A|G|1418
8QRL|1|A|G|1419
8QRL|1|A|U|1420
8QRL|1|A|G|1421
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain F
- 28S ribosomal protein S7, mitochondrial
- Chain X
- 28S ribosomal protein S29, mitochondrial
Coloring options: