J3_8QYX_002

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CAAG*CCCAGCCCG(PSU)GGAC*GGUAG

Length

23 nucleotides

Bulged bases

8QYX|1|A2|A|218, 8QYX|1|A2|G|219, 8QYX|1|A2|PSU|224

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QYX|1|A2|C|196
8QYX|1|A2|A|197
8QYX|1|A2|A|198
8QYX|1|A2|G|199
*
8QYX|1|A2|C|215
8QYX|1|A2|C|216
8QYX|1|A2|C|217
8QYX|1|A2|A|218
8QYX|1|A2|G|219
8QYX|1|A2|C|220
8QYX|1|A2|C|221
8QYX|1|A2|C|222
8QYX|1|A2|G|223
8QYX|1|A2|PSU|224
8QYX|1|A2|G|225
8QYX|1|A2|G|226
8QYX|1|A2|A|227
8QYX|1|A2|C|228
*
8QYX|1|A2|G|240
8QYX|1|A2|G|241
8QYX|1|A2|U|242
8QYX|1|A2|A|243
8QYX|1|A2|G|244

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F2

60S ribosomal protein L4

Chain S1

60S ribosomal protein L26