J3_8QYX_006

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CAGUCCGCC*GGCGGUGCG*CGACG

Length

23 nucleotides

Bulged bases

8QYX|1|A2|C|704, 8QYX|1|A2|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QYX|1|A2|C|451
8QYX|1|A2|A|452
8QYX|1|A2|G|453
8QYX|1|A2|U|454
8QYX|1|A2|C|455
8QYX|1|A2|C|456
8QYX|1|A2|G|457
8QYX|1|A2|C|458
8QYX|1|A2|C|459
*
8QYX|1|A2|G|697
8QYX|1|A2|G|698
8QYX|1|A2|C|699
8QYX|1|A2|G|700
8QYX|1|A2|G|701
8QYX|1|A2|U|702
8QYX|1|A2|G|703
8QYX|1|A2|C|704
8QYX|1|A2|G|705
*
8QYX|1|A2|C|1292
8QYX|1|A2|G|1293
8QYX|1|A2|A|1294
8QYX|1|A2|C|1295
8QYX|1|A2|G|1296

Current chains

Chain A2

28S rRNA

Nearby chains

Chain H2

60S ribosomal protein L6

Chain Y1

60S ribosomal protein L32

Chain Z1

60S ribosomal protein L35a

Chain k1

60S ribosomal protein L28