J3_8QYX_007

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8QYX|1|A2|G|959, 8QYX|1|A2|C|962, 8QYX|1|A2|G|965, 8QYX|1|A2|C|967, 8QYX|1|A2|C|968, 8QYX|1|A2|C|969, 8QYX|1|A2|U|971, 8QYX|1|A2|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QYX|1|A2|C|712
8QYX|1|A2|C|713
*
8QYX|1|A2|G|955
8QYX|1|A2|A|956
8QYX|1|A2|G|957
8QYX|1|A2|G|958
8QYX|1|A2|G|959
8QYX|1|A2|A|960
8QYX|1|A2|G|961
8QYX|1|A2|C|962
8QYX|1|A2|G|963
8QYX|1|A2|A|964
8QYX|1|A2|G|965
8QYX|1|A2|A|966
8QYX|1|A2|C|967
8QYX|1|A2|C|968
8QYX|1|A2|C|969
8QYX|1|A2|G|970
8QYX|1|A2|U|971
8QYX|1|A2|C|972
8QYX|1|A2|G|973
8QYX|1|A2|C|974
8QYX|1|A2|C|975
8QYX|1|A2|G|976
*
8QYX|1|A2|C|1278
8QYX|1|A2|A|1279
8QYX|1|A2|C|1280
8QYX|1|A2|G|1281
8QYX|1|A2|G|1282
8QYX|1|A2|G|1283
8QYX|1|A2|G|1284

Current chains

Chain A2

28S rRNA

Nearby chains

Chain A1

Large ribosomal subunit protein uL30

Chain F2

60S ribosomal protein L4

Chain H2

60S ribosomal protein L6

Chain Y1

60S ribosomal protein L32