J3_8QYX_014
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 8QYX|1|A2|C|2470, 8QYX|1|A2|A|2472, 8QYX|1|A2|G|2475, 8QYX|1|A2|G|2503
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QYX|1|A2|A|2451
8QYX|1|A2|G|2452
8QYX|1|A2|A|2453
8QYX|1|A2|U|2454
8QYX|1|A2|G|2455
8QYX|1|A2|G|2456
*
8QYX|1|A2|C|2465
8QYX|1|A2|G|2466
8QYX|1|A2|U|2467
8QYX|1|A2|U|2468
8QYX|1|A2|C|2469
8QYX|1|A2|C|2470
8QYX|1|A2|G|2471
8QYX|1|A2|A|2472
8QYX|1|A2|A|2473
8QYX|1|A2|G|2474
8QYX|1|A2|G|2475
8QYX|1|A2|G|2476
*
8QYX|1|A2|C|2501
8QYX|1|A2|G|2502
8QYX|1|A2|G|2503
8QYX|1|A2|C|2504
8QYX|1|A2|C|2505
8QYX|1|A2|G|2506
8QYX|1|A2|A|2507
8QYX|1|A2|PSU|2508
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain B1
- 60S ribosomal protein L7a
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D2
- Large ribosomal subunit protein uL2
- Chain H1
- 60S ribosomal protein L15
- Chain R1
- 60S ribosomal protein L23a
- Chain d1
- 60S ribosomal protein L37
Coloring options: