3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
AGAUGG*CGUUCCGAAGGG*CGGCCGA(PSU)
Length
26 nucleotides
Bulged bases
8QYX|1|A2|C|2470, 8QYX|1|A2|A|2472, 8QYX|1|A2|G|2475, 8QYX|1|A2|G|2503
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8QYX|1|A2|A|2451
8QYX|1|A2|G|2452
8QYX|1|A2|A|2453
8QYX|1|A2|U|2454
8QYX|1|A2|G|2455
8QYX|1|A2|G|2456
*
8QYX|1|A2|C|2465
8QYX|1|A2|G|2466
8QYX|1|A2|U|2467
8QYX|1|A2|U|2468
8QYX|1|A2|C|2469
8QYX|1|A2|C|2470
8QYX|1|A2|G|2471
8QYX|1|A2|A|2472
8QYX|1|A2|A|2473
8QYX|1|A2|G|2474
8QYX|1|A2|G|2475
8QYX|1|A2|G|2476
*
8QYX|1|A2|C|2501
8QYX|1|A2|G|2502
8QYX|1|A2|G|2503
8QYX|1|A2|C|2504
8QYX|1|A2|C|2505
8QYX|1|A2|G|2506
8QYX|1|A2|A|2507
8QYX|1|A2|PSU|2508

Current chains

Chain A2
28S rRNA

Nearby chains

Chain B1
60S ribosomal protein L7a
Chain C2
5.8S ribosomal RNA; 5.8S rRNA
Chain D2
Large ribosomal subunit protein uL2
Chain H1
60S ribosomal protein L15
Chain R1
60S ribosomal protein L23a
Chain d1
60S ribosomal protein L37

Coloring options:

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