J3_8QYX_023

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CA(PSU)*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

8QYX|1|A2|U|4989, 8QYX|1|A2|C|4990, 8QYX|1|A2|A|5061

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QYX|1|A2|C|4970
8QYX|1|A2|A|4971
8QYX|1|A2|PSU|4972
*
8QYX|1|A2|G|4986
8QYX|1|A2|C|4987
8QYX|1|A2|U|4988
8QYX|1|A2|U|4989
8QYX|1|A2|C|4990
8QYX|1|A2|U|4991
*
8QYX|1|A2|A|5060
8QYX|1|A2|A|5061
8QYX|1|A2|G|5062
8QYX|1|A2|G|5063

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain J1

60S ribosomal protein L17

Chain X1

60S ribosomal protein L31