J3_8QYX_024

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CCAUAC*GG*UG

Length

10 nucleotides

Bulged bases

8QYX|1|B2|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_26985.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

7

Unit IDs

8QYX|1|B2|C|9
8QYX|1|B2|C|10
8QYX|1|B2|A|11
8QYX|1|B2|U|12
8QYX|1|B2|A|13
8QYX|1|B2|C|14
*
8QYX|1|B2|G|65
8QYX|1|B2|G|66
*
8QYX|1|B2|U|109
8QYX|1|B2|G|110

Current chains

Chain B2

5S rRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain D1

Ribosomal protein uL16-like

Chain G2

60S ribosomal protein L5

Chain N1

60S ribosomal protein L21