J3_8R55_010

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

8R55|1|X|U|733, 8R55|1|X|G|839, 8R55|1|X|A|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8R55_010 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0993

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8R55|1|X|U|730
8R55|1|X|G|731
8R55|1|X|A|732
8R55|1|X|U|733
8R55|1|X|C|734
8R55|1|X|U|735
8R55|1|X|A|736
*
8R55|1|X|U|820
8R55|1|X|A|821
8R55|1|X|G|822
*
8R55|1|X|C|838
8R55|1|X|G|839
8R55|1|X|A|840
8R55|1|X|A|841

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain Z

Large ribosomal subunit protein uL2

Chain b

Large ribosomal subunit protein uL4