3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UGAUCUA*UGG*CAAA
Length
14 nucleotides
Bulged bases
8R8M|1|a|U|686, 8R8M|1|a|A|792
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8R8M_010 not in the Motif Atlas
Homologous match to J3_7RQB_004
Geometric discrepancy: 0.1924
The information below is about J3_7RQB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.4
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

8R8M|1|a|U|683
8R8M|1|a|G|684
8R8M|1|a|A|685
8R8M|1|a|U|686
8R8M|1|a|C|687
8R8M|1|a|U|688
8R8M|1|a|A|689
*
8R8M|1|a|U|773
8R8M|1|a|G|774
8R8M|1|a|G|775
*
8R8M|1|a|C|791
8R8M|1|a|A|792
8R8M|1|a|A|793
8R8M|1|a|A|794

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 1
Large ribosomal subunit protein bL34
Chain c
Large ribosomal subunit protein uL2
Chain e
Large ribosomal subunit protein uL4

Coloring options:


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