3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases
8R8M|1|A|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8R8M_023 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.0697
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8R8M|1|A|U|672
8R8M|1|A|A|673
*
8R8M|1|A|U|717
8R8M|1|A|A|718
8R8M|1|A|C|719
8R8M|1|A|C|720
8R8M|1|A|G|721
8R8M|1|A|G|722
8R8M|1|A|U|723
8R8M|1|A|G|724
8R8M|1|A|G|725
*
8R8M|1|A|C|732
8R8M|1|A|G|733
8R8M|1|A|G|734

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain F
30S ribosomal protein S6, fully modified isoform
Chain K
Small ribosomal subunit protein uS11
Chain O
Small ribosomal subunit protein uS15
Chain R
Small ribosomal subunit protein bS18
Chain U
Small ribosomal subunit protein bS21

Coloring options:


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