J3_8R8M_025

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8R8M_025 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.0757

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8R8M|1|A|U|1073
8R8M|1|A|G|1074
*
8R8M|1|A|U|1083
8R8M|1|A|G|1084
8R8M|1|A|U|1085
8R8M|1|A|U|1086
*
8R8M|1|A|G|1099
8R8M|1|A|C|1100
8R8M|1|A|A|1101
8R8M|1|A|A|1102

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain E

Small ribosomal subunit protein uS5

Chain U

Small ribosomal subunit protein bS21