3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
8R8M|1|a|A|504, 8R8M|1|a|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8R8M_028 not in the Motif Atlas
Homologous match to J3_5J7L_066
Geometric discrepancy: 0.1149
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8R8M|1|a|G|30
8R8M|1|a|C|31
*
8R8M|1|a|G|474
8R8M|1|a|C|475
8R8M|1|a|G|476
8R8M|1|a|A|477
8R8M|1|a|A|478
8R8M|1|a|A|479
8R8M|1|a|A|480
8R8M|1|a|G|481
8R8M|1|a|A|482
8R8M|1|a|A|483
8R8M|1|a|C|484
*
8R8M|1|a|G|496
8R8M|1|a|A|497
8R8M|1|a|G|498
8R8M|1|a|U|499
8R8M|1|a|G|500
8R8M|1|a|A|501
8R8M|1|a|A|502
8R8M|1|a|A|503
8R8M|1|a|A|504
8R8M|1|a|A|505
8R8M|1|a|G|506
8R8M|1|a|A|507
8R8M|1|a|A|508
8R8M|1|a|C|509
8R8M|1|a|C|510

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain p
Large ribosomal subunit protein bL20
Chain r
Large ribosomal subunit protein uL22
Chain t
Large ribosomal subunit protein uL24

Coloring options:


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