J3_8RCL_006

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCL_006 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0817

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8RCL|1|72|C|2091
8RCL|1|72|U|2092
8RCL|1|72|G|2093
*
8RCL|1|72|C|2196
8RCL|1|72|U|2197
8RCL|1|72|A|2198
8RCL|1|72|A|2199
8RCL|1|72|C|2200
*
8RCL|1|72|G|2223
8RCL|1|72|G|2224
8RCL|1|72|A|2225
8RCL|1|72|C|2226
8RCL|1|72|A|2227
8RCL|1|72|G|2228

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain 12

50S ribosomal protein L28

Chain b2

50S ribosomal protein L2

Chain i2

50S ribosomal protein L9