J3_8RCL_015
3D structure
- PDB id
- 8RCL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli paused disome complex (Non-rotated disome interface class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8RCL|1|A1|A|958, 8RCL|1|A1|A|975, 8RCL|1|A1|G|976, 8RCL|1|A1|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RCL_015 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.1072
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8RCL|1|A1|U|955
8RCL|1|A1|U|956
8RCL|1|A1|U|957
8RCL|1|A1|A|958
8RCL|1|A1|A|959
8RCL|1|A1|U|960
8RCL|1|A1|U|961
8RCL|1|A1|C|962
*
8RCL|1|A1|G|973
8RCL|1|A1|A|974
8RCL|1|A1|A|975
8RCL|1|A1|G|976
8RCL|1|A1|A|977
8RCL|1|A1|A|978
8RCL|1|A1|C|979
8RCL|1|A1|C|980
8RCL|1|A1|U|981
8RCL|1|A1|U|982
8RCL|1|A1|A|983
8RCL|1|A1|C|984
*
8RCL|1|A1|G|1221
8RCL|1|A1|G|1222
8RCL|1|A1|C|1223
8RCL|1|A1|U|1224
8RCL|1|A1|A|1225
Current chains
- Chain A1
- 16S ribosomal RNA
Nearby chains
- Chain J1
- 30S ribosomal protein S10
- Chain M1
- Small ribosomal subunit protein uS13
- Chain N1
- Small ribosomal subunit protein uS14
- Chain S1
- Small ribosomal subunit protein uS19
- Chain Y1
- Transfer RNA; tRNA
Coloring options: