J3_8RCL_022

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCL_022 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1026

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8RCL|1|A2|C|936
8RCL|1|A2|A|937
8RCL|1|A2|A|938
8RCL|1|A2|G|939
*
8RCL|1|A2|C|1344
8RCL|1|A2|U|1345
8RCL|1|A2|A|1346
8RCL|1|A2|G|1347
8RCL|1|A2|U|1348
8RCL|1|A2|A|1349
8RCL|1|A2|A|1350
*
8RCL|1|A2|U|1372
8RCL|1|A2|G|1373
8RCL|1|A2|A|1374
8RCL|1|A2|A|1375
8RCL|1|A2|U|1376
8RCL|1|A2|A|1377
8RCL|1|A2|C|1378
8RCL|1|A2|G|1379

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain G2

30S ribosomal protein S7

Chain I2

Small ribosomal subunit protein uS9

Chain X2

Transfer RNA; tRNA