J3_8RCL_031

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8RCL|1|72|A|504, 8RCL|1|72|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCL_031 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.096

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8RCL|1|72|G|30
8RCL|1|72|C|31
*
8RCL|1|72|G|474
8RCL|1|72|C|475
8RCL|1|72|G|476
8RCL|1|72|A|477
8RCL|1|72|A|478
8RCL|1|72|A|479
8RCL|1|72|A|480
8RCL|1|72|G|481
8RCL|1|72|A|482
8RCL|1|72|A|483
8RCL|1|72|C|484
*
8RCL|1|72|G|496
8RCL|1|72|A|497
8RCL|1|72|G|498
8RCL|1|72|U|499
8RCL|1|72|G|500
8RCL|1|72|A|501
8RCL|1|72|A|502
8RCL|1|72|A|503
8RCL|1|72|A|504
8RCL|1|72|A|505
8RCL|1|72|G|506
8RCL|1|72|A|507
8RCL|1|72|A|508
8RCL|1|72|C|509
8RCL|1|72|C|510

Current chains

Chain 72

23S ribosomal RNA

Nearby chains