J3_8RCL_032

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8RCL|1|72|U|34, 8RCL|1|72|U|448, 8RCL|1|72|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCL_032 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0611

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8RCL|1|72|C|32
8RCL|1|72|C|33
8RCL|1|72|U|34
8RCL|1|72|G|35
*
8RCL|1|72|C|445
8RCL|1|72|G|446
8RCL|1|72|A|447
8RCL|1|72|U|448
8RCL|1|72|A|449
8RCL|1|72|G|450
8RCL|1|72|U|451
8RCL|1|72|G|452
8RCL|1|72|A|453
8RCL|1|72|A|454
8RCL|1|72|C|455
8RCL|1|72|C|456
8RCL|1|72|A|457
8RCL|1|72|G|458
8RCL|1|72|U|459
8RCL|1|72|A|460
8RCL|1|72|C|461
*
8RCL|1|72|G|468
8RCL|1|72|G|469
8RCL|1|72|A|470
8RCL|1|72|A|471
8RCL|1|72|A|472
8RCL|1|72|G|473

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain l2

50S ribosomal protein L34