J3_8RCM_022

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCM_022 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1036

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8RCM|1|A2|C|936
8RCM|1|A2|A|937
8RCM|1|A2|A|938
8RCM|1|A2|G|939
*
8RCM|1|A2|C|1344
8RCM|1|A2|U|1345
8RCM|1|A2|A|1346
8RCM|1|A2|G|1347
8RCM|1|A2|U|1348
8RCM|1|A2|A|1349
8RCM|1|A2|A|1350
*
8RCM|1|A2|U|1372
8RCM|1|A2|G|1373
8RCM|1|A2|A|1374
8RCM|1|A2|A|1375
8RCM|1|A2|U|1376
8RCM|1|A2|A|1377
8RCM|1|A2|C|1378
8RCM|1|A2|G|1379

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain G2

30S ribosomal protein S7

Chain I2

Small ribosomal subunit protein uS9

Chain X2

Transfer RNA; tRNA