J3_8RCM_023

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCM_023 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1186

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8RCM|1|A2|U|943
8RCM|1|A2|G|944
8RCM|1|A2|G|945
8RCM|1|A2|A|946
*
8RCM|1|A2|U|1235
8RCM|1|A2|A|1236
8RCM|1|A2|C|1237
*
8RCM|1|A2|G|1337
8RCM|1|A2|G|1338
8RCM|1|A2|A|1339
8RCM|1|A2|A|1340

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain I2

Small ribosomal subunit protein uS9

Chain M2

Small ribosomal subunit protein uS13

Chain W

Transfer RNA; tRNA

Chain X2

Transfer RNA; tRNA