J3_8RCM_031

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8RCM|1|72|A|504, 8RCM|1|72|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCM_031 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0936

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8RCM|1|72|G|30
8RCM|1|72|C|31
*
8RCM|1|72|G|474
8RCM|1|72|C|475
8RCM|1|72|G|476
8RCM|1|72|A|477
8RCM|1|72|A|478
8RCM|1|72|A|479
8RCM|1|72|A|480
8RCM|1|72|G|481
8RCM|1|72|A|482
8RCM|1|72|A|483
8RCM|1|72|C|484
*
8RCM|1|72|G|496
8RCM|1|72|A|497
8RCM|1|72|G|498
8RCM|1|72|U|499
8RCM|1|72|G|500
8RCM|1|72|A|501
8RCM|1|72|A|502
8RCM|1|72|A|503
8RCM|1|72|A|504
8RCM|1|72|A|505
8RCM|1|72|G|506
8RCM|1|72|A|507
8RCM|1|72|A|508
8RCM|1|72|C|509
8RCM|1|72|C|510

Current chains

Chain 72

23S ribosomal RNA

Nearby chains