J3_8RCM_032

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8RCM|1|72|U|34, 8RCM|1|72|U|448, 8RCM|1|72|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCM_032 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0621

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8RCM|1|72|C|32
8RCM|1|72|C|33
8RCM|1|72|U|34
8RCM|1|72|G|35
*
8RCM|1|72|C|445
8RCM|1|72|G|446
8RCM|1|72|A|447
8RCM|1|72|U|448
8RCM|1|72|A|449
8RCM|1|72|G|450
8RCM|1|72|U|451
8RCM|1|72|G|452
8RCM|1|72|A|453
8RCM|1|72|A|454
8RCM|1|72|C|455
8RCM|1|72|C|456
8RCM|1|72|A|457
8RCM|1|72|G|458
8RCM|1|72|U|459
8RCM|1|72|A|460
8RCM|1|72|C|461
*
8RCM|1|72|G|468
8RCM|1|72|G|469
8RCM|1|72|A|470
8RCM|1|72|A|471
8RCM|1|72|A|472
8RCM|1|72|G|473

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain l2

50S ribosomal protein L34