J3_8RCM_048

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8RCM|1|A2|C|48, 8RCM|1|A2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCM_048 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1288

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8RCM|1|A2|G|46
8RCM|1|A2|C|47
8RCM|1|A2|C|48
8RCM|1|A2|U|49
8RCM|1|A2|A|50
8RCM|1|A2|A|51
8RCM|1|A2|C|52
*
8RCM|1|A2|G|359
8RCM|1|A2|G|360
8RCM|1|A2|G|361
8RCM|1|A2|G|362
8RCM|1|A2|A|363
8RCM|1|A2|A|364
8RCM|1|A2|U|365
8RCM|1|A2|A|366
8RCM|1|A2|U|367
*
8RCM|1|A2|A|393
8RCM|1|A2|G|394
8RCM|1|A2|C|395

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain L2

Small ribosomal subunit protein uS12