J3_8RCS_013

3D structure

PDB id

8RCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.46 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCS_013 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1927

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8RCS|1|A1|C|936
8RCS|1|A1|A|937
8RCS|1|A1|A|938
8RCS|1|A1|G|939
*
8RCS|1|A1|C|1344
8RCS|1|A1|U|1345
8RCS|1|A1|A|1346
8RCS|1|A1|G|1347
8RCS|1|A1|U|1348
8RCS|1|A1|A|1349
8RCS|1|A1|A|1350
*
8RCS|1|A1|U|1372
8RCS|1|A1|G|1373
8RCS|1|A1|A|1374
8RCS|1|A1|A|1375
8RCS|1|A1|U|1376
8RCS|1|A1|A|1377
8RCS|1|A1|C|1378
8RCS|1|A1|G|1379

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain G1

30S ribosomal protein S7

Chain I1

Small ribosomal subunit protein uS9