J3_8RCS_032

3D structure

PDB id

8RCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.46 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8RCS|1|72|U|34, 8RCS|1|72|U|448, 8RCS|1|72|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCS_032 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0647

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8RCS|1|72|C|32
8RCS|1|72|C|33
8RCS|1|72|U|34
8RCS|1|72|G|35
*
8RCS|1|72|C|445
8RCS|1|72|G|446
8RCS|1|72|A|447
8RCS|1|72|U|448
8RCS|1|72|A|449
8RCS|1|72|G|450
8RCS|1|72|U|451
8RCS|1|72|G|452
8RCS|1|72|A|453
8RCS|1|72|A|454
8RCS|1|72|C|455
8RCS|1|72|C|456
8RCS|1|72|A|457
8RCS|1|72|G|458
8RCS|1|72|U|459
8RCS|1|72|A|460
8RCS|1|72|C|461
*
8RCS|1|72|G|468
8RCS|1|72|G|469
8RCS|1|72|A|470
8RCS|1|72|A|471
8RCS|1|72|A|472
8RCS|1|72|G|473

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain l2

50S ribosomal protein L34