J3_8RCT_022

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCT_022 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1022

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8RCT|1|A2|C|936
8RCT|1|A2|A|937
8RCT|1|A2|A|938
8RCT|1|A2|G|939
*
8RCT|1|A2|C|1344
8RCT|1|A2|U|1345
8RCT|1|A2|A|1346
8RCT|1|A2|G|1347
8RCT|1|A2|U|1348
8RCT|1|A2|A|1349
8RCT|1|A2|A|1350
*
8RCT|1|A2|U|1372
8RCT|1|A2|G|1373
8RCT|1|A2|A|1374
8RCT|1|A2|A|1375
8RCT|1|A2|U|1376
8RCT|1|A2|A|1377
8RCT|1|A2|C|1378
8RCT|1|A2|G|1379

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain G2

30S ribosomal protein S7

Chain I2

Small ribosomal subunit protein uS9